Index

A

add_neutral_loss() (pyascore.PyAscore method)

C

calculate_ambiguity() (pyascore.PyAscore method)

consume_peptide() (pyascore.PyModifiedPeptide method)

G

get_fragment_graph() (pyascore.PyModifiedPeptide method) get_fragment_mz() (pyascore.PyFragmentGraph method) get_fragment_seq() (pyascore.PyFragmentGraph method)

get_fragment_size() (pyascore.PyFragmentGraph method) get_peptide() (pyascore.PyModifiedPeptide method) get_signature() (pyascore.PyFragmentGraph method) get_site_determining_ions() (pyascore.PyModifiedPeptide method)

I

IdentificationParser (class in pyascore) incr_fragment() (pyascore.PyFragmentGraph method) incr_signature() (pyascore.PyFragmentGraph method)

is_fragment_end() (pyascore.PyFragmentGraph method) is_signature_end() (pyascore.PyFragmentGraph method) iter_fragments() (pyascore.PyFragmentGraph method) iter_permutations() (pyascore.PyFragmentGraph method)

M

MassCorrector (class in pyascore)

P

PyAscore (class in pyascore)

PyFragmentGraph (class in pyascore) PyModifiedPeptide (class in pyascore)

R

reset_fragment() (pyascore.PyFragmentGraph method)

reset_iterator() (pyascore.PyFragmentGraph method)

S

score() (pyascore.PyAscore method)

set_signature() (pyascore.PyFragmentGraph method) SpectraParser (class in pyascore)

T

to_dict() (pyascore.IdentificationParser method) (pyascore.SpectraParser method)

to_list() (pyascore.IdentificationParser method) (pyascore.SpectraParser method)